ggbeast
Plotting BEAST outputs with ggplot2
To install the package use:
remotes::install_github("wilsonfrantine/ggbeast")
Plotting Extended Bayesian Skyline Plots
You can just run the lines bellow, changing the words between quotes by the file path for your EBSP results.
library("ggbeast")
p1 <- ggebsp("path_to_your_EBSP_run_log_file")
p1
Customizing it
As any other ggplot2 object, you can customize it wherever you want. To see how to change specificities as colors, time scales, Ne scales and how to plot many ebsp runs, please take a look at this vignette
or open from your R.
vignette("using_ggbeast")
Have fun!
If you get any crash, please get in touch: wilsonfrantine@gmail.com
References and Credits
This package is highly based on the code writen by Joseph Heled and Tim Vaughan in Extended Bayesian Skyline Plot tutorial for BEAST 2 Joseph Heled (updated for BEAST 2 by Tim Vaughan)